Find research papers:

PhD dissertation

June 12, 2008:

Shestakov, Denis: Search interfaces on the Web: querying and characterizing, TUCS Dissertations 104, 2008. Link Lectio Praecursoria

Press release: What Google doesn't know [in English] and Googlelta piilossa [in Finnish]

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Media coverage:

Taloussanomat, 07.06.2008: Google on yllättävän sokea Link

Turun Sanomat, 11.06.2008: Vähintään puolet internetin sisällöstä jää hakuohjelmilta piiloon Link

Åbo Underrättelser, 11.06.2008: Doktorande synar den dolda webben Link

MTV3, 12.06.2008: Google ei löydä kaikkea tietoa Link

Refereed publications

2009:

Shestakov, D.: Deep Web: databases on the Web, Entry in Handbook of Research on Innovations in Database Technologies and Applications: Current and Future Trends, 2009. Request

2008:

Shestakov, D.: The size of the Web in terms of HTTP servers, In preparation.

Shestakov, D.: Dynamic content mirroring on the Web, In preparation.

Shestakov, D., Salakoski, T.: Characterization of national deep Web, Submitted.

2007:

Shestakov, D., Salakoski, T.: On estimating the scale of national deep Web, In Proceedings of DEXA'07, p.780-789, 2007. Link

2005:

Shestakov, D., Bhowmick, S., Lim, E.-P.: DEQUE: querying the deep Web, Data&Knowledge Engineering Journal (DKE), 52(3), p.273-311, 2005. Link

Shestakov, D., Salakoski, T.: Web services for DNA sequence analysis, In Proceedings of BIDM'05, p.600-604, 2005. Link

Shestakov, D., Vorontsova, N.: Characterization of Russian deep Web, In Proceedings of Yandex Research Contest, p.320-341, 2005 [In Russian]. Link

2003:

Shestakov, D.: A prototype system for retrieving dynamic content, In Proceedings of NetObjectDays'03, 2003. Link

Posters & technical reports

Shestakov, D., Salakoski, T., Vihinen, M.: WSCUA: web services for codon usage analysis, Poster at ECCB’05, 2005.

Shestakov, D., Salakoski, T.: CUDXML: codon usage database in XML format, Poster at Integrative Bioinformatics’06, 2006.

Shestakov, D., Salakoski, T., Vihinen, M.: CUXSD: XML Schema for codon usage data, Poster at ECCB’06, 2006.

Shestakov, D.: Statistical modeling of overlapping genes in prokaryotic genomes, Technical report.

Shestakov, D., Salakoski, T.: Characterization of national deep Web, Technical report.