{"id":828,"date":"2021-10-18T13:16:07","date_gmt":"2021-10-18T10:16:07","guid":{"rendered":"https:\/\/users.utu.fi\/taesho\/?page_id=828"},"modified":"2022-06-28T20:38:48","modified_gmt":"2022-06-28T17:38:48","slug":"data-och-skript","status":"publish","type":"page","link":"https:\/\/users.utu.fi\/taesho\/sv\/forskning\/data-och-skript\/","title":{"rendered":"Data och skript"},"content":{"rendered":"<p>Jag v\u00e4grar l\u00e5ta den data som jag tillbringat \u00e5ratal med att samla ligga oanv\u00e4nd. H\u00e4r en \u00f6verblick \u00f6ver forskningsdatan jag samlat in, och hur man f\u00e5r tag i den. Fr\u00e4mst handlar det om insektdata fr\u00e5n Uganda.<\/p>\n<p>Dessutom finns h\u00e4r flera skript. De flesta \u00e4r nog inte s\u00e5 anv\u00e4ndbara f\u00f6r andra \u00e4n mig sj\u00e4lv, men de som brukar <a href=\"https:\/\/laji.fi\/sv\">Finlands Artdatacenter<\/a> kan m\u00f6jligen hitta n\u00e5got anv\u00e4ndbart.<\/p>\n<h3>Artdatacentret (laji.fi)<\/h3>\n<p>Alltid n\u00e4r jag n\u00e5lar en insekt s\u00e5 f\u00e5r den en QR-kod och en egen n\u00e4tsida. D\u00e4r hittar man all information om n\u00e4r och var den samlades in, osv! Ta en titt p\u00e5 t. ex. <a href=\"http:\/\/mus.utu.fi\/ZMUT.4920\">http:\/\/mus.utu.fi\/ZMUT.4920<\/a><\/p>\n<p>De flesta \u00e4r <a href=\"https:\/\/laji.fi\/sv\/observation\/list?countryId=ML.228&amp;lifeStage=ADULT&amp;teamMemberId=322004&amp;individualCountMax=1\">n\u00e5lade ugandesiska insekter<\/a>. Varje <a href=\"https:\/\/laji.fi\/sv\/observation\/list?target=MX.37602&amp;countryId=ML.228&amp;teamMemberId=322004&amp;includeSubTaxa=false\">Malaiseprov fr\u00e5n Uganda<\/a> (cirka 2 dl insekter var) finns ocks\u00e5 d\u00e4r.<\/p>\n<p>Andra \u00e4n ugandesiska fynd finns ocks\u00e5. T. ex. <a href=\"https:\/\/laji.fi\/sv\/observation\/list?area=Vals%C3%B6rarna&amp;teamMemberId=322004\">insekterna som jag samlade in<\/a> p\u00e5 <a href=\"https:\/\/www.google.com\/maps\/place\/Vals%C3%B6rarna\/@63.4257491,19.9511784,8z\/data=!4m5!3m4!1s0x467d0c6af147a461:0x6e796d70f0d720c7!8m2!3d63.4211756!4d21.0682675\">Vals\u00f6rarna<\/a> 2021.<\/p>\n<p>Alla prover som jag samlat in (och som hittas i databas) uppdateras till <a href=\"https:\/\/bionomia.net\/0000-0002-2256-0098\">Bionomia<\/a>. Du kan ladda ner en \u00f6verblickstabell \u00f6ver dessa fr\u00e5n <a href=\"https:\/\/doi.org\/10.5281\/zenodo.6764739\">Zenodo<\/a>.<\/p>\n<p>Observera att de flesta insekter som jag samlat inte syns i Artdatacentret, eftersom jag bara hunnit genomg\u00e5 och ladda upp en liten br\u00e5kdel av dem.<\/p>\n<p>F\u00f6r att f\u00e5 tag i datan, kan du:<\/p>\n<ol>\n<li>Ladda ner den fr\u00e5n <a href=\"https:\/\/laji.fi\/sv\">laji.fi<\/a>, eller<\/li>\n<li>Kolla fr\u00e5n <a href=\"https:\/\/laji.fi\/sv\">laji.fi<\/a> (eller <a href=\"https:\/\/bionomia.net\/0000-0002-2256-0098\">Bionomia<\/a> \/ <a href=\"https:\/\/doi.org\/10.5281\/zenodo.6764739\">Zenodo<\/a>) vad du vill ha, och be mig skicka den.<\/li>\n<\/ol>\n<p>Jag rekommenderar den senaren\u00e4mda, eftersom jag l\u00e4tt kan skicka datan som Excel eller csv-fil, i ett format som genast kan anv\u00e4ndas. Datan som laddas direkt fr\u00e5n laji.fi \u00e4r inte (\u00e4nnu) l\u00e4tthanterlig.<\/p>\n<h3>Zenodo<\/h3>\n<p>D\u00e5 jag publicerar en artikel s\u00e5 laddar jag dess data i <a href=\"https:\/\/zenodo.org\/\">Zenodo<\/a>. Dit hamnar ocks\u00e5 koden som jag anv\u00e4nt f\u00f6r att analysera datan, rita grafer m.m.<\/p>\n<p>St\u00f6rsta delen av datan handlar om <a href=\"https:\/\/zenodo.org\/communities\/uganda2014-2015\/?page=1&amp;size=20\">ugandesiska steklar<\/a>. Ladda ner de h\u00e4r s\u00e5 kan du upprepa vilken som helst av mina artiklar.<\/p>\n<p>Jag rekommenderar s\u00e4rskilt bakgrundsdatan f\u00f6r v\u00e5ra l\u00e5ngvariga insamlingar med Malaisef\u00e4llor i <a href=\"https:\/\/doi.org\/10.5281\/zenodo.2225642\">Uganda<\/a> och <a href=\"https:\/\/doi.org\/10.5281\/zenodo.3559053\">Peru<\/a>. Vilka prover samlade vi in och n\u00e4r? Hur s\u00e5g v\u00e4dret ut? Hur mycket d\u00f6d ved fanns det n\u00e4ra f\u00e4llorna? Ladda ner datan s\u00e5 f\u00e5r du veta! D\u00e4r finns till och med GPS-sp\u00e5ren fr\u00e5n Uganda och min f\u00e4ltanteckningar.<\/p>\n<p>En del av den tidigaste datan finns i <a href=\"https:\/\/doi.org\/10.6084\/m9.figshare.3172780.v1\">figshare<\/a> i st\u00e4llet f\u00f6r Zenodo.<\/p>\n<h3>Annan data<\/h3>\n<p>Datan fr\u00e5n min <a href=\"http:\/\/urn.fi\/URN:NBN:fi-fe2017121155661\"><strong>pro gradu<\/strong><\/a> finns (f\u00f6r tillf\u00e4llet) inte i n\u00e5got permanent arkiv. Du kan ladda ner datan <a href=\"https:\/\/seafile.utu.fi\/f\/70a2f16bfa11466e98d4\/?raw=1\">h\u00e4r<\/a>. <a href=\"https:\/\/seafile.utu.fi\/f\/311a9902962246bc87aa\/?raw=1\">R\u00e5datan<\/a> inneh\u00e5ller ocks\u00e5 mina f\u00e4ltanteckningar. L\u00e4sbarheten \u00e4r det lite si och s\u00e5 med.. jag har sedan dess l\u00e4rt mig hantera data b\u00e4ttre (och skriva tydligare).<\/p>\n<p>Dessutom finns det datan fr\u00e5n <strong>Vals\u00f6rarna<\/strong>. Fyra prototyper p\u00e5 insektkameror tog video p\u00e5 f\u00f6rbiflygande insekter 24\/7 sommaren 2021. Ypperlig data f\u00f6r att t. ex. ta reda p\u00e5 vilken \u00e5rstid eller tidpunkt olika insekter \u00e4r aktiva! Tyv\u00e4rr har jag inte hittat n\u00e5t st\u00e4lle p\u00e5 n\u00e4tet som skulle v\u00e4lkomna \u00f6ver 2 TB video av insekter..<\/p>\n<p>H\u00e4r ett exempel p\u00e5 hur det ser ut. Ta kontakt om du vill anv\u00e4nda dessa, vi listar nog ut hur du f\u00e5r datan! Jag kommer snart att publicera en artikel om dessa, men den har fokus p\u00e5 metoden snarare \u00e4n datan.<\/p>\n<div class=\"ast-oembed-container \" style=\"height: 100%;\"><iframe loading=\"lazy\" title=\"Vals\u00f6rarna insektkamera (1\/2)(3 2021-07-30 17:16:37 UTC+00)\" width=\"500\" height=\"375\" src=\"https:\/\/www.youtube.com\/embed\/U7pv8ZyFk0U?start=514&#038;feature=oembed\" frameborder=\"0\" allow=\"accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share\" referrerpolicy=\"strict-origin-when-cross-origin\" allowfullscreen><\/iframe><\/div>\n<h3>GitHub<\/h3>\n<p>Skriptet som jag analyserat en artikels data med laddar jag upp till Zenodo. Men det finns ett flertal andra uppgifter som jag hellre l\u00e5ter datorn sk\u00f6ta \u00e4n g\u00f6r dem sj\u00e4lv.<\/p>\n<p>I <a href=\"https:\/\/github.com\/tapani-hopkins\/\">GitHub<\/a> finns varierande skript f\u00f6r att bearbeta data fr\u00e5n Artdatacentret, automatiskt laga ett artbest\u00e4mningsnyckel m.m. Kvaliteten och anv\u00e4ndbarheten varierar dock..<\/p>\n<p>Den mest anv\u00e4ndbara \u00e4r nog koden f\u00f6r v\u00e5ra l\u00e5ngvariga insamlingar i Uganda och Peru. Mata in datan f\u00f6r en underfamilj, s\u00e5 rensar koden den, ritar bilder p\u00e5 n\u00e4r och var de olika arterna f\u00e5ngades.. egentligen allt som beh\u00f6vs f\u00f6r att skriva en artikel i stil med <a href=\"https:\/\/doi.org\/10.1098\/rsos.190913\">https:\/\/doi.org\/10.1098\/rsos.190913<\/a>. L\u00e4nk \u00e4nnu p\u00e5 kommande, jag laddar upp koden n\u00e4r jag f\u00e5tt den mer anv\u00e4ndarv\u00e4nlig \u00e4n vad den nu \u00e4r.<\/p>\n<p>Skripten \u00e4r R eller Python. Riktiga programmerare var varnade: jag har mest <a href=\"https:\/\/xkcd.com\/1513\/\">l\u00e4rt mig programmera sj\u00e4lv<\/a>. Detta m\u00e4rker man fr\u00e5n mina tidigare skript!<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Jag v\u00e4grar l\u00e5ta den data som jag tillbringat \u00e5ratal med att samla ligga oanv\u00e4nd. H\u00e4r en \u00f6verblick \u00f6ver forskningsdatan jag samlat in, och hur man f\u00e5r tag i den. Fr\u00e4mst handlar det om insektdata fr\u00e5n Uganda. Dessutom finns h\u00e4r flera skript. De flesta \u00e4r nog inte s\u00e5 anv\u00e4ndbara f\u00f6r andra \u00e4n mig sj\u00e4lv, men de [&hellip;]<\/p>\n","protected":false},"author":6396,"featured_media":0,"parent":645,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"","meta":{"site-sidebar-layout":"default","site-content-layout":"default","ast-site-content-layout":"default","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"","ast-breadcrumbs-content":"","ast-featured-img":"","footer-sml-layout":"","ast-disable-related-posts":"","theme-transparent-header-meta":"default","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"default","ast-page-background-enabled":"default","ast-page-background-meta":{"desktop":{"background-color":"var(--ast-global-color-4)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"ast-content-background-meta":{"desktop":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"tablet":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""},"mobile":{"background-color":"var(--ast-global-color-5)","background-image":"","background-repeat":"repeat","background-position":"center center","background-size":"auto","background-attachment":"scroll","background-type":"","background-media":"","overlay-type":"","overlay-color":"","overlay-opacity":"","overlay-gradient":""}},"footnotes":""},"class_list":["post-828","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/users.utu.fi\/taesho\/wp-json\/wp\/v2\/pages\/828","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/users.utu.fi\/taesho\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/users.utu.fi\/taesho\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/users.utu.fi\/taesho\/wp-json\/wp\/v2\/users\/6396"}],"replies":[{"embeddable":true,"href":"https:\/\/users.utu.fi\/taesho\/wp-json\/wp\/v2\/comments?post=828"}],"version-history":[{"count":11,"href":"https:\/\/users.utu.fi\/taesho\/wp-json\/wp\/v2\/pages\/828\/revisions"}],"predecessor-version":[{"id":1613,"href":"https:\/\/users.utu.fi\/taesho\/wp-json\/wp\/v2\/pages\/828\/revisions\/1613"}],"up":[{"embeddable":true,"href":"https:\/\/users.utu.fi\/taesho\/wp-json\/wp\/v2\/pages\/645"}],"wp:attachment":[{"href":"https:\/\/users.utu.fi\/taesho\/wp-json\/wp\/v2\/media?parent=828"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}